Mark DePristo 7bf5ca51ee Major bugfix for adaptive contexts ... -- Basically I was treating the context history in the wrong direction, effectively predicting the further bases in the context based on the closer one. Totally backward. Updated the code to build the tree in the right direction. -- Added a few more useful outputs for analysis (minPenalty and maxPenalty) -- Misc. cleanup of the code -- Overall I'm not 100% certain this is even the right way to think about the problem. Clearly this is producing a reasonable output but the sum of chi2 values over the entire tree is just enormous. Perhaps a MCMC convergence / sampling criterion would be a better way to think about this problem?		2012-08-06 11:42:55 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Major bugfix for adaptive contexts	2012-08-06 11:42:55 -04:00
test	Ready for full-scale evaluation adaptive BQSR contexts	2012-08-03 16:02:53 -04:00