chartl 7bc2049031 Updates and bug fixes to private mutations qscript and pipeline libraries. Hand filter strings are now not busted (boo to having to escape quotes); convenience method added to VariantCalling to propagate standard trait data to a given GATK command line -- should be made more scala-esque in the future. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4824 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-13 04:55:13 +00:00
..
qscript	Updates and bug fixes to private mutations qscript and pipeline libraries. Hand filter strings are now not busted (boo to having to escape quotes); convenience method added to VariantCalling to propagate standard trait data to a given GATK command line -- should be made more scala-esque in the future.	2010-12-13 04:55:13 +00:00
src	Updates and bug fixes to private mutations qscript and pipeline libraries. Hand filter strings are now not busted (boo to having to escape quotes); convenience method added to VariantCalling to propagate standard trait data to a given GATK command line -- should be made more scala-esque in the future.	2010-12-13 04:55:13 +00:00
test/org/broadinstitute/sting/queue	Switched from LSF command line wrappers to JNA wrappers around the C API. Side effects:	2010-12-10 04:36:06 +00:00