weisburd 7b8056099c Fixed 'N' reference-base handling, changed some comments, var names ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3162 348d0f76-0448-11de-a6fe-93d51630548a		2010-04-14 14:37:25 +00:00
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alignment	adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come.	2010-03-03 15:56:44 +00:00
analyzecovariates	Removed the StingException when mkdir fails for Sendu in AnalyzeCovariates. Incremental updates to VariantOptimizer.	2010-03-16 19:45:02 +00:00
gatk	Refactoring intervals, separating the process of parsing interval lists,	2010-04-13 15:50:38 +00:00
oneoffprojects	Added the ability in VE2 to select which eval modules to run, so that you aren't forced to use all of them. You can use --list to list all of the possible modules to run.	2010-04-13 22:15:58 +00:00
playground	Fixed 'N' reference-base handling, changed some comments, var names	2010-04-14 14:37:25 +00:00
utils	Refactoring intervals, separating the process of parsing interval lists,	2010-04-13 15:50:38 +00:00