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gatk-3.8/scala/qscript/oneoffs/depristo
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depristo cdb0bde952 Bringing script up to date 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5526 348d0f76-0448-11de-a6fe-93d51630548a
 		2011-03-27 20:49:07 +00:00
..
1kg_table1.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
CleaningTest.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
RefineGenotypesWithBeagle.q A script for playing with BEAGLE refinement parameters. Supports construction of reference panels from NGS data sets with varying niteration and calibration curve parameters, as well as imputing missing genotypes in a VCF with this reference panel, and comparison to a deeply sequenced individual. 2011-03-27 12:44:25 +00:00
VQSRCutByNRS.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
manySampleUGPerformance.scala Bringing script up to date 2011-03-27 20:49:07 +00:00
resequencingSamples1KG.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00