Mark DePristo 7b07c4e04e RefMetaDataTracker now has get() methods accepting RodBindings ... RodBinding no longer duplicates the get() methods in RMDT. This is just an object now that connects the command line system to the RMDT. Updated programs to use new style Added UnitTests for the RodBinding accessors.		2011-07-30 15:34:11 -04:00
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R	Moved gsalib sources from private/ to public/	2011-07-27 12:29:43 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	RefMetaDataTracker now has get() methods accepting RodBindings	2011-07-30 15:34:11 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/stable	2011-07-23 12:59:53 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00