fromer 3839fd1a25 Updated phasing pipeline to properly read samples from VCF and BAM files ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5172 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-02 07:16:05 +00:00
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filters	Initial commit of tools under development for data QC through firehose.	2010-02-12 19:13:24 +00:00
tools	Initial implementation of UserError exceptions and error message overhaul. UserErrors and their subclasses UserError.MalFormedBam for example should be used when the GATK detects errors on part of the user. The output for errors is now much clearer and hopefully will reduce GS posts. Please start using UserError and its subclasses in your code. I've replace some, but not all, of the StingExceptions in the GATK with UserError where appropriate.	2010-09-09 11:32:20 +00:00
utils	deleting accidentally committed junk	2010-10-08 15:13:01 +00:00
walkers	Updated phasing pipeline to properly read samples from VCF and BAM files	2011-02-02 07:16:05 +00:00