gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 7acf2eb0e7 Added a more efficient implementation of the KBest haplotype finder code. Story: https://www.pivotaltracker.com/story/show/66238286 Changes: 1. Created a new k-best haplotype search implementation in class KBestHaplotypeFinder. 2. Changed HC code to use the new implementation. This seems to fix the original problem without causing significant changes in outputs using some empirical data test cases 3. Moved haplotype's cigar calculation code from Path to CigarUtils; need that in order to gain independence from Path in some parts of the code. In any case that seems like a more natural location for that functionality.		2014-03-04 12:22:14 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Added a more efficient implementation of the KBest haplotype finder code.	2014-03-04 12:22:14 -05:00
public	Added a more efficient implementation of the KBest haplotype finder code.	2014-03-04 12:22:14 -05:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Adding the external example to the build.	2014-02-15 01:26:07 +08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Separate failsafe directories for each of the integration test types [#66515572 ]	2014-02-27 04:43:39 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/