Mark DePristo 7ab7c873a1 Temp. to PairHMM to avoid bad likelihoods ... -- Simply caps PairHMM likelihoods from rising above 0 by taking the min of the likelihood and 0. Will be properly fixed in GATK 2.5 with better PairHMM implementation.		2013-03-18 12:34:51 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Temp. to PairHMM to avoid bad likelihoods	2013-03-18 12:34:51 -04:00
test	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00