gatk-3.8

gatk3的最后一个经典版本3.8

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Mark DePristo 7ab7c873a1 Temp. to PairHMM to avoid bad likelihoods -- Simply caps PairHMM likelihoods from rising above 0 by taking the min of the likelihood and 0. Will be properly fixed in GATK 2.5 with better PairHMM implementation.		2013-03-18 12:34:51 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Included an accidental change from unstable into the previous push	2013-03-05 09:03:31 -05:00
public	Temp. to PairHMM to avoid bad likelihoods	2013-03-18 12:34:51 -04:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00