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gatk-3.8/protected/java/test/org/broadinstitute/sting/utils/recalibration
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Eric Banks b53336c2d0 Added hidden mode for BQSR to force all read groups to be the same one. 
* Very useful for debugging sample-specific issues
 * This argument got lost in the transition from BQSR v1 to v2
 * Added unit test to cover this case
 		2013-05-06 19:09:10 -04:00
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ContextCovariateUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
CycleCovariateUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
QualQuantizerUnitTest.java Cleanup and unit tests for QualityUtils 2013-02-16 07:31:37 -08:00
ReadCovariatesUnitTest.java Swap java Random generator for GATK one to ensure test determinism 2013-02-04 10:57:34 -05:00
ReadGroupCovariateUnitTest.java Added hidden mode for BQSR to force all read groups to be the same one. 2013-05-06 19:09:10 -04:00
RecalDatumUnitTest.java Cleanup and unit tests for QualityUtils 2013-02-16 07:31:37 -08:00
RecalUtilsUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RecalibrationReportUnitTest.java Cleanup and unit tests for QualityUtils 2013-02-16 07:31:37 -08:00
RecalibrationTablesUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RecalibrationTestUtils.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
RepeatCovariatesUnitTest.java Add option to specify maximum STR length to RepeatCovariates from command line to ease testing 2013-02-01 13:51:31 -05:00