gatk3的最后一个经典版本3.8

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Eric Banks 7aa1f56dff We need to enforce a minimum base and mapping quality threshold to penalize a callset for FNs. This is used in conjunction with the -BAM argument in AssessNA12878 and is necessary for the Jenkins assessment to work properly (Ryan's commit wasn't enough).		2013-06-27 15:58:39 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Merge pull request #298 from broadinstitute/md_likelihood_rank_sum	2013-06-27 11:14:25 -07:00
public	Move DownsampleReadsQC walker to private	2013-06-25 15:48:44 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit