gatk-3.8/java/src/org/broadinstitute/sting/gatk/traversals
hanna a5154d99a3 Haven't heard any complaints, so I'm deleting the original implementation of TraverseByLociByReference. All TbyLbyR's will now go through the new sharding code.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@637 348d0f76-0448-11de-a6fe-93d51630548a
2009-05-08 13:37:00 +00:00
..
TraversalEngine.java Oops, typo and build problems. FYI, fixing typos is better than packing... 2009-04-25 01:37:17 +00:00
TraversalStatistics.java Fixes for including duplicate reads in the locus traversal; now checks that the ref arg is provided when needed 2009-04-17 01:27:36 +00:00
TraverseByLoci.java Interval-based traversals were bleeding file handles. Fixed. 2009-04-26 18:35:54 +00:00
TraverseByLocusWindows.java Start getting the cleaner working in Walker 2009-04-29 14:59:53 +00:00
TraverseByReads.java Enabled ReduceByInterval 2009-04-24 21:39:44 +00:00
TraverseByReference.java Enabled ReduceByInterval 2009-04-24 21:39:44 +00:00
TraverseDuplicates.java fixing oddities in duplicates 2009-05-07 18:55:45 +00:00
TraverseLociByReference.java Introduce new index-based fasta reader. Clean up MicroManager code, pushing necessary code back into TraversalEngine. 2009-04-24 19:40:21 +00:00
TraverseReads.java Added code to the schedulers, one step closer to turning on the new reads traversals 2009-05-06 22:36:25 +00:00