hanna 7a9cfe1f75 Push reduceInit down a level so that the walker can call into it without weird casts. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@638 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-08 13:46:28 +00:00
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gatk	Push reduceInit down a level so that the walker can call into it without weird casts.	2009-05-08 13:46:28 +00:00
playground	Hypen-style xml output. Much sexier.	2009-05-08 01:04:40 +00:00
utils	Started the process to make the GATK engine into a runnable object so we can call it from other processes. Step 1: make a configuration object that can serialize to and from an XML file. This way we can store the information everyone uses shell scripts for. Also we can now pull the list of params out of the GenomeAnalysisTK.java. More to come...	2009-05-08 01:25:26 +00:00