delangel 5af986e0c1 Add an integration test for Beagle (one for ProduceBeagleInput and one for BeagleOutputToVCFWalker) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3897 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-29 18:49:22 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Add back MyHaplotypeScore as a new implementation for HaplotypeScore, this time as a non-standard annotation. Implementaiton is also better, it computes better consensus haplotypes, ranks them by sum of quality score.	2010-07-27 21:23:19 +00:00
test	Add an integration test for Beagle (one for ProduceBeagleInput and one for BeagleOutputToVCFWalker)	2010-07-29 18:49:22 +00:00