gatk3的最后一个经典版本3.8

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Phillip Dexheimer 7a2b70a10f Made IntervalSharder respect the IntervalMergingRule specified on the command line * This addresses PT Bug 69741902 * Added a required IMR argument to FilePointer, BAMScheduler, IntervalSharder, and SAMDataSource * This rule is used by FilePointer.combine and FilePointer.union * Added unit and integration tests		2014-04-30 22:07:22 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	When we subset PLs because Alleles are removed during genotyping we also need to subset AD.	2014-04-28 15:52:26 -04:00
public	Made IntervalSharder respect the IntervalMergingRule specified on the command line	2014-04-30 22:07:22 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests	2014-03-10 21:24:03 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Quoting -out parameter during resource bundle (StingText.properties) creation.	2014-04-15 17:06:49 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/