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Mauricio Carneiro ed91461c49 Data Processing Pipeline Test 
* Added standard pipeline test for the DPP
* Added a full BWA pipeline test for the DPP
* Included the extra files for the reference needed by BWA (to be used by DPP and PPP tests)
 		2011-12-12 00:24:51 -05:00
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vcf
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HiSeq.10000.bgzip.vcf.gz Adding bgzip vcf file for unit tests 2011-09-21 15:39:45 -04:00
HiSeq.10000.vcf
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HiSeq.10000.vcf.gz GZIP VCF for testing 2011-08-19 09:05:39 -04:00
TabularDataTest.dat
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TabularDataTest2.dat
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ValidatingPileupTargets.list
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ceutrio.ped Oops, forgot the PED test file 2011-10-05 21:09:08 -07:00
defaultGATKConfig.cfg
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diffTestMaster.vcf First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure. 2011-07-04 16:11:42 -04:00
diffTestTest.vcf First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure. 2011-07-04 16:11:42 -04:00
exampleBAM.bam PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleBAM.bam.bai PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleBAM.simple.bai Testdata for diffObjects. 2011-07-18 10:47:03 -04:00
exampleBAM.simple.bam Testdata for diffObjects. 2011-07-18 10:47:03 -04:00
exampleDBSNP.vcf PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleFASTA.dict
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exampleFASTA.fasta
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exampleFASTA.fasta.amb Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.ann Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.bwt Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.fai
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exampleFASTA.fasta.pac Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rbwt Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rpac Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rsa Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.sa Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleNORG.bam
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exampleNORG.bam.bai
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gFFTest.gff
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genotypes_chr1_ASW_phase3.3_first500.hapmap
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logisticParamsTest.list
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overlapTest.bed Testdata for IntervalStratification 2011-11-10 11:08:34 -05:00
recalConfig_1KG.cfg
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sampleBedFile.bed
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small.dbsnp.rod
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tranches.4.txt
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tranches.6.txt
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tranches.raw.dat
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withSymbolic.b37.vcf Testdata for IntervalStratification 2011-11-10 11:08:34 -05:00