gatk3的最后一个经典版本3.8

Mark DePristo 7a247df922 Added -bcf argument to VCFWriter output to force BCF regardless of file extension ... -- Now possible to do -o /dev/stdout -bcf -l DEBUG > tmp.bcf and create a valid BCF2 file -- Cleanup code to make sure extensions easier by moving to a setX model in VariantContextWriterStub		2012-08-16 13:03:13 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Adding tests for the --solid_nocall_strategy argument	2012-08-15 23:13:24 -04:00
public	Added -bcf argument to VCFWriter output to force BCF regardless of file extension	2012-08-16 13:03:13 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00