Eric Banks 7a0f6feda4 Make sure that too many alternate alleles aren't being passed to the genotyper (10 for now) and exit with a UserError if there are.		2011-12-05 16:18:52 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Make sure that too many alternate alleles aren't being passed to the genotyper (10 for now) and exit with a UserError if there are.	2011-12-05 16:18:52 -05:00
test	Fixed bug where k=2N case wasn't properly being computed. Added optimization for BB genotype case not in old model. At this point, integration tests pass except for 1 case where QUALs differ by 0.01 (this is okay because I occasionally need to compute extra cells in the matrix which affects the approximations) and 2 cases where multi-allelic indels are being genotyped (some work still needs to be done to support them).	2011-12-03 23:12:04 -05:00