gatk3的最后一个经典版本3.8

Ryan Poplin 79ef41e7b1 Added some docs, unit test, and contracts to SimpleDeBruijnAssembler. ... -- Testing that cycles in the reference graph fail graph construction appropriately. -- Minor bug fix in assembly with reduced reads. Added some docs and contracts to SimpleDeBruijnAssembler Added a unit test to SimpleDeBruijnAssembler		2013-02-04 15:17:22 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Added some docs, unit test, and contracts to SimpleDeBruijnAssembler.	2013-02-04 15:17:22 -05:00
public	Part 1 of Variant Annotator Unit tests: PerReadAlleleLikelihoodMap	2013-02-04 14:16:06 -05:00
settings	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00