zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/public/java/test/org/broadinstitute/sting/gatk/walkers
History
Mark DePristo 79e4a8f6d3 Merge 
Conflicts:
	private/java/src/org/broadinstitute/sting/gatk/walkers/qc/TestVariantContextWalker.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java
	public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java
	public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersPerformanceTest.java
	public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
	public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java
 		2011-08-03 15:09:47 -04:00
..
annotator Contracts and documentation for some of RefMetaDataTracker 2011-08-03 13:34:20 -04:00
beagle --variants throughout integrationtests 2011-08-02 20:28:47 -04:00
coverage Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
diffengine GATKReport v0.2: 2011-08-03 00:24:47 -04:00
fasta --variants throughout integrationtests 2011-08-02 20:28:47 -04:00
filters Contracts and documentation for some of RefMetaDataTracker 2011-08-03 13:34:20 -04:00
genotyper Merge branch 'master' into rodRefactor 2011-08-02 14:21:58 -04:00
indels Updating tools to use the RodBinding<T> syntax 2011-08-02 14:05:51 -04:00
phasing Updated MD5 for PhaseByTransmissionIntegrationTest 2011-07-26 17:52:25 -04:00
qc --variants throughout integrationtests 2011-08-02 20:28:47 -04:00
recalibration Merge 2011-08-03 15:09:47 -04:00
validation When using the BWA bindings, you have to explicitly call close() to get the 2011-07-21 12:13:29 -04:00
varianteval GATKReport v0.2: 2011-08-03 00:24:47 -04:00
variantrecalibration Walker test system refactoring. All MD5DB related functions are now in MD5DB.java. 2011-07-18 10:46:01 -04:00
variantutils Merge 2011-08-03 15:09:47 -04:00
BAQIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
ClipReadsWalkersIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PileupWalkerIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PrintReadsIntegrationTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
PrintReadsWalkerUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00