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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk
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Mark DePristo 79e4a8f6d3 Merge 
Conflicts:
	private/java/src/org/broadinstitute/sting/gatk/walkers/qc/TestVariantContextWalker.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java
	public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java
	public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersPerformanceTest.java
	public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
	public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java
 		2011-08-03 15:09:47 -04:00
..
arguments Updating tools to use the RodBinding<T> syntax 2011-08-02 14:05:51 -04:00
datasources Contracts and documentation for some of RefMetaDataTracker 2011-08-03 13:34:20 -04:00
executive Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
filters Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
iterators Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
refdata Contracts and documentation for some of RefMetaDataTracker 2011-08-03 13:34:20 -04:00
report GATKReport v0.2: 2011-08-03 00:24:47 -04:00
traversals Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
walkers Merge 2011-08-03 15:09:47 -04:00
EngineFeaturesIntegrationTest.java Approaching the end for the new RodBinding system 2011-08-02 22:00:06 -04:00
GenomeAnalysisEngineUnitTest.java Fixing broken paths to the testdata directory throughout the codebase. 2011-06-29 17:36:47 -04:00
WalkerManagerUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00