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Conflicts: private/java/src/org/broadinstitute/sting/gatk/walkers/qc/TestVariantContextWalker.java public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java public/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersPerformanceTest.java public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java public/java/test/org/broadinstitute/sting/utils/variantcontext/VariantContextIntegrationTest.java |
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