20 lines
825 B
Scala
20 lines
825 B
Scala
package org.broadinstitute.sting.queue
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import org.testng.annotations.Test
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import org.broadinstitute.sting.BaseTest
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/**
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* A temporary integration test to ensure that the full calling pipeline compiles. To be enhanced...
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*/
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class FullCallingPipelineIntegrationTest extends QScriptTest {
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@Test
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def testCompileFullCallingPipeline = {
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val command = ("-jobProject QueuePipelineTest -S %1$sscala/qscript/fullCallingPipeline.q -Y %2$s " +
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"-refseqTable /humgen/gsa-hpprojects/GATK/data/Annotations/refseq/refGene-big-table-hg18.txt " +
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"--gatkjar %1$sdist/GenomeAnalysisTK.jar -titv 3.0 -skipCleaning").format(
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stingDir, BaseTest.validationDataLocation + "QueuePipelineTestData/QueuePipelineTestData.yaml"
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)
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executeTest("fullCallingPipeline", command, null)
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}
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}
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