David Roazen 794f275871 SnpEff is now marked as a RodRequiringAnnotation instead of an ExperimentalAnnotation. ... Having SnpEff grouped with the Experimental annotations was proving problematic, since it requires a rod. Placing it in its own group should improve the situation somewhat, making it easier to request "all annotations except for SnpEff".		2011-10-11 12:08:56 -04:00
..
R	Fixing units in queue job report Gantt plots	2011-09-12 09:01:34 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	SnpEff is now marked as a RodRequiringAnnotation instead of an ExperimentalAnnotation.	2011-10-11 12:08:56 -04:00
packages	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00