rpoplin 78e94b5a84 TableRecalibration now puts the full list of walker arguments into the PG tag of the bam file it creates. Thanks Matt and Eric. Also, the default nback for the HomopolymerCovariate is 8, down from 10. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2339 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-12 17:29:41 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	TableRecalibration now puts the full list of walker arguments into the PG tag of the bam file it creates. Thanks Matt and Eric. Also, the default nback for the HomopolymerCovariate is 8, down from 10.	2009-12-12 17:29:41 +00:00
test/org/broadinstitute/sting	Now that we always output the VCF header, make sure that we correctly handle the situation where there are no records in the file. Added unit tests as well.	2009-12-11 19:51:05 +00:00