21 lines
825 B
XML
21 lines
825 B
XML
<?xml version="1.0" encoding="UTF-8"?>
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<package>
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<name>ReadQualityRecalibrator</name>
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<main-class>org.broadinstitute.sting.gatk.CommandLineGATK</main-class>
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<dependencies>
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<class>org.broadinstitute.sting.playground.gatk.walkers.CovariateCounterWalker</class>
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<class>org.broadinstitute.sting.playground.gatk.walkers.LogisticRecalibrationWalker</class>
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</dependencies>
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<scripts>
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<file>python/RecalQual.py</file>
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<file>python/LogisticRegressionByReadGroup.py</file>
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</scripts>
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<resources>
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<file>R/logistic_regression.R</file>
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<file>/humgen/gsa-scr1/GATK_Data/dbsnp_129_b36.rod</file>
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<file>/broad/1KG/reference/human_b36_both.fasta</file>
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<file>/broad/1KG/reference/human_b36_both.dict</file>
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<file>/broad/1KG/reference/human_b36_both.fasta.fai</file>
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</resources>
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</package>
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