Eric Banks 7897d52f32 Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec). ... * As reported here: http://gatkforums.broadinstitute.org/discussion/comment/4270#Comment_4270 * This was a commit into the variant.jar; the changes here are a rev of that jar and handling of errors in VF * Added integration test to confirm failure with User Error * Removed illegal header line in KB test VCF that was causing related tests to fail.		2013-04-05 00:52:32 -04:00
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java	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00