gatk-3.8/public
Yossi Farjoun 7896055be3 - Fixed bug in GenomeLoc parser
- Added a warning when two contigs are too similar that it might cause problems with parsing
- Added tests of modified parser and of warning.
2016-02-02 06:53:22 -05:00
..
VectorPairHMM Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00
c After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive. 2014-05-19 17:36:41 -04:00
chainFiles The contig is named MT not M in b36. Delivers PT68890442. 2014-04-08 10:03:47 -04:00
doc Updated readme in public/doc to just point to the website 2015-03-12 11:52:48 -04:00
external-example Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00
gatk-engine Remove variant contig order check 2016-01-16 19:32:28 -05:00
gatk-queue Expose time between checks for whether new jobs can be submitted as a user-settable parameter on CLi. Useful when testing pipelines to make idle time shorter. Contributed by @dakl (Daniel Klevebring on GATK forum). 2016-01-22 12:13:07 -05:00
gatk-queue-extensions-generator Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00
gatk-queue-extensions-public Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00
gatk-root Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00
gatk-tools-public Remove unneeded dependency 2016-01-21 16:51:01 -05:00
gatk-utils - Fixed bug in GenomeLoc parser 2016-02-02 06:53:22 -05:00
gsalib Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00
java/config Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
package-tests Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00
repo Updated gatk so it compiles on java 8 2015-06-26 15:59:46 -04:00
src/main Added faster built executable, non-packaged jars. 2014-11-05 00:30:46 +08:00
pom.xml Update pom versions to mark the start of GATK 3.6 development 2015-11-25 01:52:51 -05:00