Eric Banks 78721ee09b Added new walker to split MNPs into their allelic primitives (SNPs). ... * Can be extended to complex alleles at some point. * Currently only works for bi-allelics (documented). * Added unit and integration tests.		2013-03-05 23:16:42 -05:00
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commandline	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
gatk	Fixed the add functionality of GenomeLocSortedSet.	2013-02-28 23:31:00 -05:00
jna	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
utils	Added new walker to split MNPs into their allelic primitives (SNPs).	2013-03-05 23:16:42 -05:00
BaseTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
ExampleToCopyUnitTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
MD5DB.java	Encrypt GATK AWS keys using the GATK private key, and decrypt as needed as a resource when uploading to AWS logs	2013-01-30 16:42:23 -05:00
MD5Mismatch.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
StingTextReporter.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
TestNGTestTransformer.java	Extend default timeout to 20 minutes	2013-02-13 17:43:40 -08:00
WalkerTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00