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David Roazen 78562c14bb Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 
-These tests are really integration tests for Queue rather than generalized
 pipeline tests, so it makes sense to call them QueueTests.

-Rename test classes and maven build targets, and update shell scripts
 to reflect new naming.
 		2014-03-10 21:24:03 -04:00
..
c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
chainFiles
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doc Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs) 2013-03-12 10:57:14 -04:00
external-example Update pom versions to mark the start of GATK 3.1 development 2014-03-06 00:05:58 -05:00
gatk-framework Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00
gatk-package Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00
gatk-queue-extgen Update pom versions to mark the start of GATK 3.1 development 2014-03-06 00:05:58 -05:00
gsalib Update pom versions to mark the start of GATK 3.1 development 2014-03-06 00:05:58 -05:00
java/config Moved files to maven directories. 2014-02-03 13:50:44 -05:00
package-tests Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
queue-framework Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00
queue-package Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00
repo Replaced local drmaa and Jama artifacts with versions from maven central. 2014-02-22 01:21:35 +08:00
sting-root Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00
sting-utils Update pom versions to mark the start of GATK 3.1 development 2014-03-06 00:05:58 -05:00
pom.xml Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00