Guillermo del Angel 782453235a Updated VariantEvalIntegrationTest since there's a new column separating nMixed and nComplex in CountVariants ... Misc updates to WholeGenomeIndelCalling.scala Bug fix in VariantEval (may be temporary, need more investigation): if -disc option is used in sites-only vcf's then a null pointer exception is produced, caused by recent introduction of -xl_sf options.		2011-08-20 12:24:22 -04:00
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R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	Updated VariantEvalIntegrationTest since there's a new column separating nMixed and nComplex in CountVariants	2011-08-20 12:24:22 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-08-10 16:57:34 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00