gatk3的最后一个经典版本3.8

Guillermo del Angel 77949ec740 Some fixes to QC commands in pipeline, and workaround for critical engine bug in GATK that makes it hang when doing small targeted BAM's with a whole exome interval list		2012-10-11 15:08:30 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Fixed ReduceReads bug where variant regions were missing.	2012-09-19 16:09:08 -04:00
public	Resolve [DEV-7]: add single-sample VCF calling at end of FASTQ-BAM pipeline. Initial steps of [DEV-4]: queue extensions for Picard QC metrics	2012-10-11 11:09:49 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00