Eric Banks 77868d034f Do not allow the use of Ns in reads for graph construction. ... Ns are treated as wildcards in the PairHMM so creating haplotypes with Ns gives them artificial advantages over other ones. This was the cause of at least one FN where there were Ns at a SNP position.		2013-06-11 11:51:26 -04:00
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gatk/walkers	Do not allow the use of Ns in reads for graph construction.	2013-06-11 11:51:26 -04:00
utils	New faster Smith-Waterman implementation that is edge greedy and assumes that ref and haplotype have same global start/end points.	2013-05-13 09:36:39 -04:00