Eric Banks 77868d034f Do not allow the use of Ns in reads for graph construction. ... Ns are treated as wildcards in the PairHMM so creating haplotypes with Ns gives them artificial advantages over other ones. This was the cause of at least one FN where there were Ns at a SNP position.		2013-06-11 11:51:26 -04:00
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java	Do not allow the use of Ns in reads for graph construction.	2013-06-11 11:51:26 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00