gatk3的最后一个经典版本3.8

Mark DePristo 773af05980 Intermediate commit for proper error handling in the NanoScheduler ... -- Refactored error handling from HMS into utils.TraversalErrorManager, which is now used by HMS and will be usable by NanoScheduler -- Generalized EngineFeaturesIntegrationTest to test map / reduce error throwing for nt 1, nt 2 and nct 2 (disabled) -- Added unit tests for failing input iterator in NanoScheduler (fails) -- Made ErrorThrowing NanoScheduable		2012-09-19 17:03:13 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Merged bug fix from Stable into Unstable	2012-09-19 16:09:45 -04:00
public	Intermediate commit for proper error handling in the NanoScheduler	2012-09-19 17:03:13 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	More memory for gatkdocs and extracthelp targets	2012-09-05 15:45:22 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00