gatk3的最后一个经典版本3.8

Ryan Poplin 76d88a2577 Scale the pruning of the assembly graph with the approximate per-sample coverage of the region. Get rid of the PriorityQueue in the assembly graph traversal because it is too slow.		2012-03-24 11:57:40 -04:00
public	New debug option to output the assembly graph in dot format. Merge nodes in assembly graph when possible.	2012-03-21 15:48:55 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00