Eric Banks 76a6e37f4f Don't output callability metrics by default anymore; one can still have them output to the 'metrics' file (which is now @Hidden because they are really for GSA use). Added a TODO to move UG from @By reference to reads and rods once LIBS is cleaned up.		2012-04-19 11:45:56 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Don't output callability metrics by default anymore; one can still have them output to the 'metrics' file (which is now @Hidden because they are really for GSA use). Added a TODO to move UG from @By reference to reads and rods once LIBS is cleaned up.	2012-04-19 11:45:56 -04:00
test	Final tweaks. Added an integration test to cover the case of SNPs and indels that start at the same position.	2012-04-17 23:54:10 -04:00