Mauricio Carneiro cb8d4c97e1 First implementation of a generic 'bundled' Data Processing Pipeline for germline and cancer. ... not ready for prime time yet!		2012-09-25 17:13:50 -04:00
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engine	Bugfix for potential SEGFAULT with JNA getting execution hosts for LSF with multiple hosts	2012-08-17 11:49:01 -04:00
extensions	Pass the original GATK unsafe parameter to the VcfGatherFunction	2012-07-02 16:03:11 -04:00
function	Added setupRetry() to modify jobs when Queue is run with '-retry' and jobs are about to restart after an error.	2012-08-13 15:43:05 -04:00
library	Fix edge case for very small VCFs	2012-01-19 00:51:28 -05:00
util	First implementation of a generic 'bundled' Data Processing Pipeline for germline and cancer.	2012-09-25 17:13:50 -04:00
QCommandLine.scala	GATK Error messages now point to the new website instead of GetSatisfaction.	2012-07-20 17:27:11 -04:00
QException.scala	…
QScript.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
QScriptManager.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
QSettings.scala	Added setupRetry() to modify jobs when Queue is run with '-retry' and jobs are about to restart after an error.	2012-08-13 15:43:05 -04:00