gatk3的最后一个经典版本3.8

Mauricio Carneiro 7660e9f820 Reimplementation of the BAM procesing pipeline using the metadata information file. ... Pipeline runs end-to-end using example metadata and has been tested only for cases where everything is ideal. Next step is to bring this to the cloud, test all different scenario (multiple tumors, single ended, missing parameters etc). Parallel next step is to add QC metrics.		2012-10-02 14:05:34 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Fixed ReduceReads bug where variant regions were missing.	2012-09-19 16:09:08 -04:00
public	First implementation of a generic 'bundled' Data Processing Pipeline for germline and cancer.	2012-09-25 17:13:50 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00