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gatk-3.8/java/src/org/broadinstitute/sting/playground/piecemealannotator
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hanna 433ad1f060 Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1196 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-07-08 18:49:08 +00:00
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IlluminaTile.java An experimental, tile-parallel version of the secondary base annotator. 2009-06-18 19:58:09 +00:00
MergeAlignedAndSecondarySAMs.java An experimental, tile-parallel version of the secondary base annotator. 2009-06-18 19:58:09 +00:00
MergeAlignedSAMs.java An experimental, tile-parallel version of the secondary base annotator. 2009-06-18 19:58:09 +00:00
MergePieces.java An experimental, tile-parallel version of the secondary base annotator. 2009-06-18 19:58:09 +00:00
SplitAlignedSAMByTile.java An experimental, tile-parallel version of the secondary base annotator. 2009-06-18 19:58:09 +00:00
TileAnnotator.java Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application. 2009-07-08 18:49:08 +00:00
VerifySAM.java An experimental, tile-parallel version of the secondary base annotator. 2009-06-18 19:58:09 +00:00