depristo 5ef4b234d8 Updates for broken integration tests. Counting annotations (AC, AF) now work correctly for AC = 0 sites ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4640 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-09 19:43:43 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	V1 of read and variant simulator and assessor. SimulateReadsForVariants generates BAM and VCF with given combinations of variant and read properties. AssessSimulatedPerformance produces a table suitable for analysis in R	2010-11-08 21:01:33 +00:00
test	Updates for broken integration tests. Counting annotations (AC, AF) now work correctly for AC = 0 sites	2010-11-09 19:43:43 +00:00