depristo 9423652ad8 Computes how well a genotype chip covers a reference panel ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5806 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-14 15:07:28 +00:00
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core	Adding another example call set to GATK resource bundle for use in VQSR wiki tutorial	2011-05-05 21:16:33 +00:00
examples	When /etc/mailname is unreadable fall back to the hostname.	2011-04-11 20:22:44 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	Computes how well a genotype chip covers a reference panel	2011-05-14 15:07:28 +00:00
playground	Changed VR tranches from old 0.1-10 to new 100 to 90.	2011-05-13 14:38:56 +00:00