Ron Levine 239151ac7b Do not process a variant if it is too large (> readLength), and log an error ... remove final keyword before refMap and altMap, constructHaplotype() changes their values return ArtificialHaplotype from constructHaplotype instaed of passing as an argument Add logic so arraycopy does not throw an IndexOutOfBoundsException, add test for a long insert		2014-10-20 15:51:32 -04:00
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src	Do not process a variant if it is too large (> readLength), and log an error	2014-10-20 15:51:32 -04:00
pom.xml	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00