Mark DePristo 75632abf88 Merge branch 'master' into rodRefactor ... Conflicts: public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToVCF.java public/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorIntegrationTest.java public/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java		2011-08-04 18:44:14 -04:00
..
R	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Merge branch 'master' into rodRefactor	2011-08-04 18:44:14 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Merge branch 'master' into rodRefactor	2011-08-04 12:48:56 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00