Mauricio Carneiro 7532be7f5a Allowing to clip after AlignmentEnd if end is soft clipped. ... Read clipper now identifies and clips even if the requested coordinate is outside the alignment but the read contains soft clipped bases in that region.		2011-08-30 02:44:46 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Allowing to clip after AlignmentEnd if end is soft clipped.	2011-08-30 02:44:46 -04:00
test	Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline:	2011-08-22 15:13:27 -04:00