Mark DePristo be66049a6f Bugfix for CommonSuffixSplitter ... -- The problem is that the common suffix splitter could eliminate the reference source vertex when there's an incoming node that contains all of the reference source vertex bases and then some additional prefix bases. In this case we'd eliminate the reference source vertex. Fixed by checking for this condition and aborting the simplification -- Update MD5s, including minor improvements		2013-04-21 19:37:01 -04:00
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java	Bugfix for CommonSuffixSplitter	2013-04-21 19:37:01 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00