gatk3的最后一个经典版本3.8

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David Roazen 74b51c5c7a Improve test suite tmp file cleanup -Make BaseTest.createTempFile() mark any possible corresponding index files for deletion on exit -Make WalkerTest mark shadow BCF files and auxiliary for deletion on exit -Make VariantRecalibrationWalkersIntegrationTest mark PDF files for deletion on exit		2014-05-27 13:41:44 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Improve test suite tmp file cleanup	2014-05-27 13:41:44 -04:00
public	Improve test suite tmp file cleanup	2014-05-27 13:41:44 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00

The Genome Analysis Toolkit