Mauricio Carneiro e39a59594a BQSR triage and test routines ... * updated BQSR queue script for faster turnaround * implemented plot generation for scatter/gatherered runs * adjusted output file names to be cooperative with the queue script * added the recalibration report file to the argument table in the report * added ReadCovariates unit test -- guarantees that all the covariates are being generated for every base in the read * added RecalibrationReport unit test -- guarantees the integrity of the delta tables		2012-04-23 11:23:00 -04:00
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sting	BQSR triage and test routines	2012-04-23 11:23:00 -04:00