Ryan Poplin 74a7674d70 Improvements to genotyping accuracy. ... -- Global mismapping penalty was only applied to the reference haplotype. This led to problems with overlapping events, mostly STR haplotypes. Now the penalty is applied to every haplotype. -- We subset the reads down to only those which overlap the event (after assembly based realignment) for likelihood calculations.		2014-07-09 13:11:07 -04:00
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gatk-package-distribution	If passed -Pgsadev, don't build the distribution package.	2014-06-10 23:33:33 -04:00
gatk-queue-extensions-distribution	Disabled ExampleUG Queue Tests, fixed internal extensions dependency.	2014-05-27 16:16:53 -04:00
gatk-queue-package-distribution	If passed -Pgsadev, don't build the distribution package.	2014-06-10 23:33:33 -04:00
gatk-tools-protected	Improvements to genotyping accuracy.	2014-07-09 13:11:07 -04:00
pom.xml	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00