gatk3的最后一个经典版本3.8

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Ryan Poplin 74a7674d70 Improvements to genotyping accuracy. -- Global mismapping penalty was only applied to the reference haplotype. This led to problems with overlapping events, mostly STR haplotypes. Now the penalty is applied to every haplotype. -- We subset the reads down to only those which overlap the event (after assembly based realignment) for likelihood calculations.		2014-07-09 13:11:07 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Improvements to genotyping accuracy.	2014-07-09 13:11:07 -04:00
public	Bug fix for poms missing package test artifacts.	2014-07-08 06:34:26 +08:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed minor pom.xml line that was out of place after sortpom.	2014-06-26 01:01:19 +08:00

The Genome Analysis Toolkit